Dataset: 11.1K articles from the COVID-19 Open Research Dataset (PMC Open Access subset)
All articles are made available under a Creative Commons or similar license. Specific licensing information for individual articles can be found in the PMC source and CORD-19 metadata
.
More datasets: Wikipedia | CORD-19

Logo Beuth University of Applied Sciences Berlin

Made by DATEXIS (Data Science and Text-based Information Systems) at Beuth University of Applied Sciences Berlin

Deep Learning Technology: Sebastian Arnold, Betty van Aken, Paul Grundmann, Felix A. Gers and Alexander Löser. Learning Contextualized Document Representations for Healthcare Answer Retrieval. The Web Conference 2020 (WWW'20)

Funded by The Federal Ministry for Economic Affairs and Energy; Grant: 01MD19013D, Smart-MD Project, Digital Technologies

Imprint / Contact

Highlight for Query ‹SARS-CoV-2 medication

Detection of neutralizing antibody against porcine epidemic diarrhea virus in subclinically infected finishing pigs

Sample collection

Blood samples were collected from growing-finishing pigs at two slaughterhouses located on Kyushu Island. Systematic sampling was conducted for 9 days from June to July 2014. At the

slaughterhouse, the samples were systematically selected from each farm at 2-pig intervals. To avoid false positive, only pigs aged over 6 months were eligible results due to maternal

antibodies. Moreover, the PED live vaccine had been administered in all of the farrow-to-finish farms sampled in this study. Information of the infected status of all farms sampled were obtained from meat inspection office of each slaughterhouse. Based on the information, the infected

status of the farms was clarified prior to sampling, where 333 samples were collected from 16 case farms and 1,223 samples were collected from 64 non-case farms. All samples were centrifuged

at 2,500 × g for 5 min to obtain sera and then stored at −20°C until use.

Neutralization test (NT)

The NT method was established by the Japanese National Institute of Animal Health and is used by the Livestock Hygiene Service Center in Japan. The NT standard protocol, Vero cells (KY-5),

and PEDV strain NK94P6 Tr (−) were kindly provided by the National Institute of Animal Health, Japan. Field strain, PEDV NK94P6 which belong to classical clade (G1) was obtained from a PED

affected farm. Vero cells were regularly maintained in Eagle’s minimal essential medium (EMEM, Sigma-Aldrich, Tokyo, Japan) supplemented with 10% (v/v) fetal bovine serum (FBS, Funakoshi,

Tokyo, Japan) and 0.295% (w/v) tryptose phosphate broth (TPB). PEDV was propagated in Vero cells in maintenance medium consisting of Eagle’s MEM supplemented with 2% FBS and 0.295% TPB. Sera

were inactivated at 56°C for 30 min prior to use. Serial two-fold dilutions of sera were mixed with an equal volume of PEDV strain NK94P6 Tr (−) suspension containing 100 × the median tissue

culture infectious dose (TCID50). The mixture was incubated for 1 hr at 37°C and then an equal volume of suspended Vero cells (approximately 30,000 cells/well) were added to each

well. Following incubation for 1 week at 37°C, serum neutralization titers were calculated and expressed as the reciprocals of the highest serum dilution that inhibits cytopathic effects.

The cut-off titer in this study was set at 2 in accordance with the NT method established by the Japanese National Institute of Animal Health. Farms with at least one positive sample in

duplicate were classified as PED-positive farms for the purposes of this study.

Statistical analysis

The Fisher’s exact test was used to assess the relationship between proportion of seropositive animals and production type. The Mann-Whitney U-test was used to analyze

association between the mean NT titer for seropositive animals and infectious status of farms. P values <0.05 were considered statistically significant. All analyses were

conducted using the computer programing language R (version 3.4.3; R development core team, Vienna, Austria).

Animal care and welfare

All animal protocols for this study were reviewed and approved by the Animal Ethics Committee of the University of Miyazaki’s Faculty of Agriculture. During the study, animal health was

monitored by licensed veterinarians and the animals were not manipulated beyond what is required for diagnostic purposes.

RESULTS

Neutralization antibody-positive animals were detected in all 16 case farms (100%) and in 6 of 64 non-case farms (9.4%; Table 1). The proportion of seropositive animals from case farms was 63.7% (212/333), significantly different from that of non-case farms (4.3% (53/1,223), P<0.05;

Table 2). The mean NT titer for seropositive animals of case farms was not significantly different from that of non-case farms (Table

3). Within-farm level, maximum proportion of seropositive animals in case farms was 100% (18/18) while the minimum was 20.0% (6/30) (Table

2). In non-case farms, the maximum and minimum values were 90.0% (9/10) and 5.6% (1/18), respectively (Table 2). The proportions of

seropositive animals in farrow-to-finish (FF) and wean-to-finish (WF) case farms were 74.0 and 57.3%, respectively, whereas they were 8.74 and 0.87% in FF and WF non-case farms, respectively.

The proportion of seropositive animals in FF farms was significantly higher than in WF for both case and non-case farms (P<0.05).

DISCUSSION

In the present study, we determined that 9.4% of non-case farms harbored growing-finishing pigs that were positive for antibodies against PEDV. Our finding suggests that there might be PEDV

infected animals in non-case farms. This means that some of the non-case farms might be not susceptible farms. Discriminating between infected and susceptible farms is critical for

implementing control measures that prevent cross-contamination between farms. It was reported that trucks in which pigs had been transported were contaminated with PEDV and that transport vehicles are a risk factor associated with the spread of PEDV. Therefore, it is important to detect

subclinical infected animals in non-case farms. Our findings show a significant difference between not only infectious status (case/non-case farms), but also production type (FF/WF). On farms

where there is frequent or continuous farrowing, the virus is maintained in successive generations of susceptible piglets. Thus, FF farms are more likely to have PEDV-positive animals than WF

farms.

The present study established a survey to detect subclinical infections in animals from non-case farms. A passive surveillance system is currently used in Japan to detect PED status. Our

results showed that some non-case farms defined as farms with no pigs demonstrating PED-like clinical symptoms indeed contain subclinical PEDV-positive animals. These results indicate that the

current passive surveillance system fails to detect subclinical PEDV infection. The actual infection status in the population can be misinterpreted when subclinical infections are present.

These hidden subclinical animals are ultimately overlooked. Consequently, appropriate epidemiological analyses and effective control measures are not performed. While passive surveillance can

rapidly detect symptomatic disease, the sensitivity of the surveillance system is affected by many factors, such as the presence of clinical cases, attentiveness of the animal producers, and

performance of the diagnostic system. It is particularly difficult to detect all cases of PEDV infections by passive surveillance as some

PEDV-infected animals appear healthy.

In Japan, PEDV infections are confirmed by histopathological diagnosis using immunofluorescence to detect the PEDV antigen and/or RT-PCR to detect the PEDV genome. However, the PEDV detection

period by these methods is very short as it is limited to the acute phase only. After that, the virus is often eliminated and disappears from the infected animals. In contrast, sero-surveys—such as the NT used in the present study—can detect antibodies against PEDV long after infection and can be useful in diagnosing both recent and

past infections [15, 19]. The presence of infectious animals increases the risk of transmission whereas recovered

animals indicates that the farm may still harbor infectious individuals capable of transmitting the virus. However, sero-surveys are unable to differentiate between infectious and recovered

NT-positive cases, as both cases are positive for specific antibodies against PEDV. NT-positive animals in this study were either infectious or completely recovered with no capacity for

disseminating the virus. In addition, cytopathic effect was sometimes inhibited nonspecifically by low dilution. Diagnosis of PEDV infection using NT should be considered comprehensively in

conjunction with detection of PEDV or PEDV genome. RT-PCR would be more appropriate to accurately classify cases in regard to the presence of PEDV genome. Therefore, the monitoring system

should utilize sero-surveys as a screening technique to enhance detection of subclinical animals. Subsequently, non-case farms with sero-positive animals should be further examined using

RT-PCR to confirm if infectious animals exist. However, the cost-effectiveness of this strategy must be further evaluated. And further research will be required to confirm the sensitivity and

specificity of NT test.

This study employed a sero-survey to provide evidence regarding the presence of seropositive animals in non-case farms. Thus, the findings derived from this study are potentially important

for preventive and control measures against future PED outbreaks.